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2013 - 2015 Publications

Mattsson, M., Hood, G.R., Feder, J.L., and Ruedas, L.A. 2015. Rapid and repeatable shifts in life‐history timing of Rhagoletis pomonella (Diptera: Tephritidae) following colonization of novel host plants in the Pacific Northwestern United States . Ecology and Evolution 5: 5823-5837. DOI: 10.1002/ece3.1826.

Hood, G.R., Forbes, A.A., Powell, T.H.Q., Egan, S.P., Smith, J.J., and Feder, J.L. 2015. Sequential divergence and the multiplicative origin of community diversity. Proceedings of the National Academy of Sciences U.S.A. doi:10.1073/pnas. 1424717112.

Arcella, T., Sim, S.B., Yee, W.L., Hood, G.R., Powell, T.H.Q., Schwarz, D., Egan, S.P., Goughnour, R.B., and Feder, J.L. 2015. Hybridization and the spread of the apple maggot fly, Rhagoletis pomonella (Diptera: Tephritidae), in the Northwestern United States. Evolutionary Applications 8: 834–846. doi: 10.1111/eva.12298.

Yee, W.L., Goughnour, R.B., Hood, G.R., Forbes, A.A., and Feder, J.L. 2015. Chilling and Host Plant/Site-Associated Eclosion Times of Western Cherry Fruit Fly (Diptera: Tephritidae) and a Host-Specific Parasitoid. Environmental Entomology 44:4 1029-1042.

Ragland, G.J., Almskaar, K., Duong, K.L., Gough, H.M., Huddleston, J., Feder, J.L., Hahn, D.A., and Schwarz, D. 2015. Differences in fitness and transcriptome-wide gene expression associated with Rhagoletis (Diptera: Tephritidae) larvae feeding in alternate host fruit environments. Molecular Ecology DOI: 10.1111/mec.13191.

Egan, S.P., Greg Ragland, G.J., Assour, L., Powell, T.H. Q.Hood, G.R., Emrich, S., Nosil, P. and Feder, J.L. 2015. Experimental evidence natural selection drives genome-wide divergence during sympatric speciation. Ecology Letters 18: 817-825. (F1000 recommended; Featured on NSF website).

Tadeo, E., Feder, J.L., Egan, S.P., Schuler, H., Aluja , M., and and Rull, J. 2015. Divergence and evolution of reproductive barriers among three allopatric populations of Rhagoletis cingulata across eastern North America and México. Entomologia Exp. et. App. 156: 301-311.

Egan, S.P., Grey, Olds, E.B., Feder, J.L., Ruggiero, S.T., Tanner, C.E., and Lodge, D.M. 2015. Molecular detection of invasive species in ballast and harbor water using environmental DNA and Light Transmission Spectroscopy. Environmental Science and Technology 49(7):4113-21. doi: 10.1021/es5058659. Epub 2015 Mar 13.

Yee, W.L., Lawrence, T.W., Hood, G.R. and Feder, J.L. 2015. New records of Rhagoletis species (Diptera: Tephritidae) and their host plants in western Montana, U.S.A. Pan Pacific Entomologist 91: 39-57.

Yee W.L., Nash, M.J., Goughnour, R.B., Cha, D.H., Linn C.E., and Feder, J.L. 2014. Ammonium carbonate is more attractive than apple and hawthorn fruit volatile Lures to Rhagoletis pomonella (Diptera: Tephritidae) in Washington State. Environ Entomol. 43: 957-68. doi: 10.1603/EN14038. Epub 2014 Jun 9.

Feder, J.L., Flaxman, S.M., and Nosil, P. 2014. Assessing when chromosomal rearrangements affect the dynamics of speciation: implications from computer simulations. Frontiers in Genetics doi: 10.3389/fgene.2014.00295.

Soria-Carrasco, V., Gompert, Z., Comeault, A.A., Farkas, T.E., Parchman, T.L., Johnson, J.S., Buerkle, C.A., Feder, J.L., Bast, J., Schwander, T., Egan, S.P., Crespi, B.J., and Nosil, P. 2014. Stick Insect Genomes Reveal Natural Selection’s Role in Parallel Speciation. Science 344: 738-742 (Research featured on cover of journal Science and in feature in Science on Aug. 8th, 2014 issue).

Feder, J.L., Nosil, P., Wacholder, A.C., Egan, S.P., Berlocher, S.H.,and Flaxman, S.M. 2014. Genome Wide Congealing and Rapid Transitions across the Speciation Continuum. Journal of Heredity 105: Suppl 1:810-20. doi: 10.1093/jhered/esu038.

Flaxman, S.M., Wacholder, A.C., Feder, J.L. and Nosil, P. 2014. Genomic architecture drives the rapid origin of new species. Molecular Ecology 23: 4074–4088. DOI: 10.1111/mec.12750.

Hood, G.R., Glover, M.M., Tait, C., Yee, W.L. and Feder, J.L. 2014. Detection of an apple-infesting population of Rhagoletis pomonella 1867 (Walsh) (Diptera: Tephritidae) in the state of Colorado, USA. The Pan Pacific-Entomologist 90: 4-10.

Deines, A.M., Ian Bbole, I., Katongo, C., Powell, T.H.Q., Feder, J.L., and Lodge, D.M. 2014. Hybridization of native Oreochromis species (Cichlidae) and the introduced Nile tilapia (O. niloticus) in the Kafue River, Zambia. African Journal of Aquatic Science: DOI:10.2989/16085914.2013.864965

Seehausen, O., Feder, J.L., and co-authors. 2014. Integrating Genomic Data and Theory in the Study of Speciation. Nature Genetics Reviews 15: 176–192.

Feder, J.L., S.P. Egan, and P. Nosil. 2014. Speciation and Genome Evolution. Pg. 549-559. In: Princeton Guide to Evolution (J. Losos, D. Schluter, eds.) Princeton University Press, New Jersey.

Smith, J.J., Powell T.Q.H., Teixeira, L., Armstrong, W.O., McClowry, R.J., Isaacs, R., R. Hood, G.R., Feder, J.L., and Gut, L. 2014. Genetic Structure of Cherry Fruit Fly (Rhagoletis Cingulata) Populations across Managed, Unmanaged, and Natural Habitats. Entomologia exp. et. Applicata 150(2): 157–165.

Gompert, Z.,¬¬ A.A. Comeault, T.E. Farkas, J.L. Feder, T.L. Parchman, C.A. Buerkle, and P. Nosil. 2014. Experimental evidence for ecological selection on genome variation in the wild. Ecology Letters 17: 369-379.

Powell, T., Hood, G.R., Egan, S.P., and Feder, J.L. 2014. Genetic differentiation among hawthorn-infesting populations of Rhagoletis pomonella (Diptera: Tephritidae) in the southern United States and its implication for endemic host race formation. Molecular Ecology 23: 688-704.

Arcella, T.E, Perry, W.L., Lodge, D.M., and Feder, J.L. 2013. The role of hybridization in a species invasion and extirpation of resident fauna: Hybrid vigor and breakdown in the rusty crayfish (Orconectes rusticus). Crustacean Biology DOI: 10.1163/1937240X-00002204.

Rull, J., Aluja, M., Tadeo, E. , Guillen, L., Egan, S.P., Glover, M., and Feder, J.L. Distribution, host plant affiliation, phenology, and phylogeny of walnut-infesting Rhagoletis flies (Diptera: Tephritidae) in Mexico. 2013. Biological Journal of the Linnean Society DOI: 10.1111/bij.12157.

Green, E., Almskaar, K., Sim, S.B., Arcella, T., Yee, W.L., Feder, J.L., and Schwarz, D. 2013. Molecular Species Identification of Cryptic Apple and Snowberry Maggots (Diptera: Tephritidae) in Western and Central Washington. 2013. Environmental Entomology 42(5):1100-1109.

Powell, T., Murphy, M., Egan, S.P., Hood, G., Sheina, S., Arcella, T., Berlocher, S., Nosil, P. and J.L., Feder. 2013. Widespread genomic divergence between sister taxa of Rhagoletis flies undergoing speciation-with-gene-flow. Special Issue “Genomic Evolution and Speciation” edited by J.L. Feder and P. Nosil. Evolution 67: 2561-2576.

Feder, J.L, Flaxman, S.M., Egan, S.P., Comeault, A.A., and P. Nosil. 2013. Geographic Mode of Speciation and Genomic Divergence. Annual Review of Ecology, Evolution, and Systematics 44:73-97.

Feder, J.L. and S.P. Egan. 2013. Sympatry and patterns of genetic differentiation in sympatry. Pgs. 606-608. In: Brenner’s Encyclopedia of Genetics, 2nd edition (S. Malloy & K. Hughes, eds.). Elsevier Press.

Egan, S.P., Barnes, M.A., Hwang, C.T., Mahon, A.R., Feder, J.L., Ruggiero, S.T., Tanner, C.E, and D.M. Lodge. 2013. Rapid invasive species detection by combining environmental DNA with Light Transmission Spectroscopy. Conservation Letters DOI: 10.1111/conl. 12017.

St. Jean, G., Egan, S.P., Yee, W.L. and J.L. Feder. 2013. Genetic Identification of an Unknown Rhagoletis Fruit Fly (Diptera: Tephritidae) Infesting Chinese Crabapple: Implications for Apple Pest Management. Journal of Economic Entomology 106: 1511-1515.

Nosil, P. and Feder, J.L. 2013. Genome evolution and speciation: towards quantitative descriptions of pattern and process. Special Issue “Genomic Evolution and Speciation” edited by J.L. Feder and P. Nosil. Evolution 67: 2461-2467.

Schuler, H., Bertheau, C., Egan, S.P., Feder, J.L., Johannesen, J., Riegler, M., Köppler, K., Schlick-Steiner, B.C., Steiner, F.M., Arthofer, W., and C. Stauffer. 2013. Recent horizontal transfer of Wolbachia between native and introduced cherry-infesting Rhagoletis fruit flies in Europe. Molecular Ecology 22: 4101–4111.

Flaxman, S.M.¬¬, Feder, J.L., and P. Nosil. 2013. Genetic Hitchhiking and the Dynamic Buildup of Genomic Divergence During Speciation-with-Gene-Flow. Special Issue “Genomic Evolution and Speciation” edited by J.L. Feder and P. Nosil. Evolution 67: 2577-2591. DOI: 10.1111/evo.12055.

Hood, G.R., Yee, W., Goughnour, R., Sim, S.B., Egan, S.P., Arcella, T., St. Jean, G., Xu, C.C., and Feder, J.L. 2013. The geographic distribution of Rhagoletis pomonella (Diptera: Tephritidae) in the western United States. Annals Ent. Soc. Amer. 106: 59-65.

Feder, J.L., Flaxman, S.M., Egan, S.P., and P. Nosil. 2013. Hybridization and the buildup of genomic divergence during speciation. Journal of Evol. Biol. 26: 261–266. doi: 10.1111/jeb.12009.