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2008 - 2012 Publications

Reidenbach, K.R., Neafsey, D.E., Costantini, C., Sagnon, N’Fale, Ragland, G.J., Egan, S.P., Feder, J.L., Muskavitch, M.A.T., and N. J. Besansky. 2012. Patterns of genomic differentiation between ecologically differentiated M and S forms of Anopheles gambiae in West and Central Africa. Genome Biology and Evolution 4: 1202-1212.

Hood G.R, S.P. Egan, and J.L. Feder. 2012. Evidence for sexual isolation as a prezygotic barrier to gene flow between morphologically divergent species of Rhagoletis fruit flies. Ecological Entomology 37(6): 521-528.

Flaxman, S.M.¬¬, J.L. Feder, and P. Nosil. 2012. Spatially explicit models of divergence and genome hitchhiking. Journal Evolutionary Biology 25: 2633-2650.

Mahon, A.R., Barnes, M.A., Li, F., Egan, S.P., Tanner, C.E., Ruggiero, S.T., Feder, J.L., and Lodge D.M. 2012. Invasive species detection capabilities using Laser Transmission Spectroscopy. Journal of the Royal Society Interface DOI: 10.1098/rsif.2012.0637.

Rull, J., E. Tadeo, M. Aluja, L Guuillen, S.P. Egan, and J.L. Feder. 2012. Hybridization and sequential components of reproductive isolation between parapatric walnut-infesting sister species Rhagoletis completa and R. zoqui. Biological Journal of the Linnean Society DOI: 10.1111/j.1095-8312.2012.01977.x

Lodge, D.M., Arcella, T., Baldridge, A.K., Barnes, M.A., Chadderton, L., Deines, A., Feder, J.L., Gantz, C., Gherardi, F., Howard, G.W., Jerde, C.L., Peters, B., Peters, J.A., Sargent, L., Wittmann, M.E.,Yeo, D.C.J., Zeng , Y. 2012. Global Introductions of Crayfishes: Evaluating the Impact of Species Invasions on Ecosystem Services. Annual Review of Ecology, Evolution, and Systematics 43: 449–472.

Nosil, P., Parchman, T.L., Feder, J.L. and Gompert, Z. 2012. Do highly divergent loci reside in genomic regions affecting speciation? A test in Timema stick insects. BMC Evolutionary Biology 12:164 DOI:10.1186/1471-2148-12-164

Hood, G.R., S.P. Egan, and J.L. Feder. 2012. Interspecific Competition and Speciation in Endoparasitoids. Evolutionary Biology 39: 219-230.

Feder, J.L. Egan, S.P., and Nosil, P. 2012. The Genomics of Speciation-With-Gene-Flow. Trends in Genetics 28: 342-50. Epub 2012 Apr 18.

Ragland, G.J., S.B. Sim, S. Goudarzi, J.L. Feder, and D.A. Hahn. 2012. Environmental interactions during host race formation: host fruit environment moderates a seasonal shift in phenology in host races of Rhagoletis pomonella. Functional Ecology DOI: 10.1111/j.1365-2435.2012.01992.x

Nosil¬¬, P., Z. Gompert, T.A. Farkas, A. Comeault, J.L. Feder, C.A. Buerkle, and T.L. Parchman. Genomic consequences of multiple speciation processes. 2012. Proceedings Royal Society B DOI: 10.1098/rspb.2012.0813

Linn, C.E. Jr. W.L. Yee, S.B. Sim, D.H. Cha, T.H.Q. Powell, R.B. Goughnour, and J.L. Feder. 2012. Behavioral evidence for fruit odor discrimination and sympatric host races of Rhagoletis pomonella flies in the western United States. Evolution DOI: 10.1111/j.1558-5646.2012.01719.×.

Nosil, P. and Feder, J.L. 2012. Widespread yet heterogeneous genomic divergence. Molecular Ecology 21: 2829–2832.

Lodge, D.M., Turner, C.R., Jerde, C.L., Barnes, M.A., Chadderton, L., Egan, S.P., Feder, J.L., Mahon, A.R., Pfrender, M.E. 2012. Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA. Molecular Ecology 21: 2555–2558.

Sim, S.B., M. Mattsson, Jasmine L. Feder, C.E. Linn Jr., D.H. Cha, W.L. Yee, R.B. Goughnour, and J.L. Feder. 2012. A field test for host fruit odour discrimination and avoidance behaviour for Rhagoletis pomonella flies in the western United States. Journal of Evolutionary Biology 25: 961-971.

Powell, T.H.Q., D. Cha, C.E. Linn Jr., and J.L. Feder. 2012. On the scent of standing variation for speciation: Behavioral evidence for native sympatric host races of Rhagoletis pomonella (Diptera: Tephritidae) in the southern United States. Evolution 66: 2739-2756.

Cha, D., T.H.Q. Powell, J.L. Feder, and C.E. Linn Jr. 2012. Geographic variation in fruit volatiles emitted by the hawthorn Crataegus mollis and its consequences for host race formation in the apple maggot fly, Rhagoletis pomonella (Diptera: Tephritidae). Entomologia Exp. et. Appl. 143: 254-268.

Egan, S.P., G.R. Hood, J.L. Feder, and J.R. Ott. 2012. Divergent host plant use promotes reproductive isolation among cynipid gall wasp populations. Biology Letters 8: 605-608 doi: 10.1098/rsbl.2011.1205.

Cha, D., Y. Wee, R. Groughour, S.B. Sim, J.L. Feder, and C.E. Linn Jr. 2012. Identification of Host Fruit Volatiles from Domesticated Apple (Malus domestica), Native Black Hawthorn (Crataegus douglasii) and Introduced Ornamental Hawthorn (C. monogyna) Attractive to Rhagoletis pomonella flies from the Western United States. J. Chemical Ecology 38: 319-29. Epub 2012 Mar 8.

Feder, J.L., S.P. Egan, and A.A. Forbes. 2012. Ecological adaptation and speciation: The evolutionary significance of habitat avoidance as a postzygotic reproductive barrier to gene flow. International Journal of Ecology Vol. 2012: Article ID 456374, 15 pages, doi:10.1155/2012/456374

Yee W.L., D.H. Cha, C.E. Linn, Jr., M.W. Klaus, R.B. Goughnour, and J.L. Feder. 2012. Abundances of apple maggot, Rhagoletis pomonella, across different areas in central Washington, with special reference to black-fruited hawthorns. Journal of Insect Science 12:124. Available online: http://www.insectscience.org/12.124.

Nosil P., and J.L. Feder. 2012. Genomic divergence during speciation: causes and consequences. Phil. Trans. Royal Society 367: 332-342.

Feder J.L., R. Gejji, S. Yeaman, and P. Nosil. 2012. Divergence and ‘Genomic’ Hitchhiking across the Speciation Continuum. Phil. Trans. Royal Society 367: 461-474 doi: 10.1098/rstb.2011.0256

Yee W.L., R.B. Goughnour, and J.L. Feder. 2012. Differences in Body Size and Egg Loads of Rhagoletis indifferens (Diptera: Tephritidae) from Introduced and Native Cherries. Environmental Entomology 40:1353-1362. doi: http://dx.doi.org/10.1603/EN11128.

Li, F., Mahon, A.R., Barnes, M.A., Feder, J., Lodge, D.M., Hwang, C-T, Schafer, R., Ruggiero, S.T., Carol E. Tanner, C.E. 2011.Quantitative and Rapid DNA Detection By Laser Transmission Spectroscopy. PLoS ONE 6: e29224. doi:10.1371/journal.pone.

Ragland, G.J., S.P. Egan, J.L. Feder, S.H. Berlocher, and D.A. Hahn. 2011. Developmental trajectories of gene expression reveal regulatory candidates for diapause termination, a key life history transition in the apple maggot fly, Rhagoletis pomonella. Journal of Experimental Biology 214: 3948-3960.

Cha, D.H., Powell T.H.Q., J.L. Feder, and C.E. Linn, Jr. 2011. Identification of Host Fruit Volatiles from Green Hawthorn (Crataegus series Aestivales) and Blueberry Hawthorn attractive to Southern Rhagoletis pomonella Flies. J. Chemical Ecology 37: 974-83. Epub 2011 Sep 2.

Cha, D.H., Powell T.H.Q., J.L. Feder, and C.E. Linn, Jr. 2011. Identification of Host Fruit Volatiles from Mayhaw (Crataegus series Aestivales) Attractive to Mayhaw Origin Rhagoletis pomonella flies. J. Chemical Ecology 37: 961-73. Epub 2011 Sep 3.

Agarwal A.F., J L. Feder, and P. Nosil. 2011. Ecological divergence and the evolution of intrinsic postmating isolation despite gene flow. International Journal of Ecology Article ID 435357, 15 pages doi:10.1155/2011/435357

Feder J.L., R. Gejji, T.H.Q. Powell, and Patrik Nosil. 2011. Adaptive Chromosomal Divergence Driven by Mixed Geographic Mode of Speciation. Evolution 65:2157-2170. doi: 10.1111/j.1558-5646.2011.01321.×. Epub 2011 May 12.

Feder, J.L. 2011. The Mystery of Speciation. pp. 117-152. In: Biological Evolution: Facts and Theories. (G. Auletta, M. LeClerc, R. A. Matinez, eds.). Gregorian & Biblical Press, Rome.

Mahon, A.R., M.A. Barnes, S. Senapati, J.L. Feder, J.A. Darling, H-C. Chang, D.M. Lodge. D.M. 2011. Molecular detection of invasive species in heterogeneous mixtures using a microfluidic carbon nanotube platform. PLoS One Feb 18; 6(2):e17280

Rull, J., M Aluja, and J.L. Feder. 2011. Distribution and basic biology of black cherry-infesting Rhagoletis (Diptera: Tephritidae) in Mexico. Annals Ent. Soc. Amer. 104: 202-211.

Forbes, A.A., G.R. Hood, T.H.Q. Powell, and J.L. Feder. 2010. Geographic and ecological overlap of parasitoid wasps associated with the Rhagoletis pomonella (Diptera: Tephritidae) species complex. Annals Ent. Soc. Amer. 103: 908-915.

Rull, J., M. Aluja, and J.L. Feder. 2010. Evolution of intrinsic reproductive isolation among four North American populations of R. Pomonella. Biol Journal of the Linnean Society 100: 213-233.

Michel, A.P., S. Sim, T.H.Q. Powell, M. S. Taylor, P. Nosil and J. L. Feder. 2010. Widespread genomic divergence during sympatric speciation. Proceedings of the National Academy of Sciences U.S.A. 107: 9724-9729.
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Feder, J.L., T.H.Q. Powell, K. Filchak and Brian Leung. 2010. The Diapause Response of Rhagoletis pomonella to Varying Environmental Conditions and its Significance for Geographic and Host-Plant Related Adaptation. Entomologia Exp. et Appl. 136: 31-44.

Feder, J.L., and P. Nosil. 2010. The efficacy of divergence hitchhiking in generating genomic islands during ecological speciation. Evolution 64:1729-1747.

Feder, J.L., and A.A. Forbes. 2010. Sequential Speciation and the Diversity of Parasitic Insects. Ecological Entomology 35: (Suppl 1) 67-76.

Ramsdell, K.M.M., S.A. Lyons-Sobaski, H. M. Robertson, K. K. O. Walden, J. L. Feder, K. Wanner and S. H. Berlocher. 2010. Expressed sequence tags from cephalic chemosensory organs of the northern walnut husk fly, Rhagoletis suavis, including a putative canonical odorant receptor. Journal of Insect Science 51: 1-11.

Schwarz, D., H. M. Robertson, J. L. Feder, K. Varala, M. E. Hudson, G. J. Ragland, D. A. Hahn and S. H. Berlocher. 2009. Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella. BMC Genomics 10:633doi:10.1186/1471-2164-10-633.

Mallet, J., A. Meyer, P. Nosil, J.L. Feder. 2009. Space, sympatry and speciation. Journal Evol. Biol.

Feder, J.L., P. Nosil. 2009. Chromosomal inversions and species differences: when are genes affecting adaptive divergence and reproductive isolation expected to reside within inversions? Evolution.

Rull, J., R. Wharton, J.L. Feder, L. Guillen, J. Sivinski, A. Forbes, M. Aluja. 2009. Latitudinal variation in parasitoid guild composition and parasitism rates of North American hawthorn infesting Rhagoletis. Environ Entomology. 38: 588-599.

Ragland, G.J., J. Fuller, J.L. Feder, D.A. Hahn. 2009. Biphasic metabolic rate trajectory of pupal diapause termination and post-diapause development in a tephritid fly. Journal Insect Physiol. 55: 344-350.

Forbes, A.A., T.H.Q. Powell, L.L. Stelinksi, J.J. Smith, and J.L. Feder. 2009. Sequential Sympatric Speciation Across Trophic Levels. Science. 323: 776-779.

Feder, J.L., S. Velez. 2009. Intergenic exchange, geographic isolation, and the evolution of bioluminescent color for Pyrophorus click beetles. Evolution 63: 1203-1216.

Berlocher, S.H. and J.L. Feder. The road less traveled:Ron Prokopy and sympatric speciation. In: Biorational Fruit Tree Pest Management. (M. Aluja, C. Vincent, T. Laskey, eds.) CABI Publishing (In Press).

Olsson, S.B., C.E. Linn, Jr., J.L. Feder, A. Michel, H.R. Dambroski, S.H. Berlocher, W.L. Roelofs. 2009. Chemoreception and sympatric speciation: Comparing peripheral olfactory coding with host preference in the Rhagoletis species complex. Chemical Senses. 34: 37-48.

Forbes, A.A., T.H.Q. Powell, M.A.F. Noor, N.F. Lobo and J.L. Feder. 2008. Polymorphic microsatellite loci for Diachasma alloeum (Hymenoptera: Braconidae). Molecular Ecology Resources 8:373-376

Xie, X., A.P. Michel, D. Schwarz, J. Rull, S. Velez, A.A. Forbes, M. Aluja, and J.L. Feder. 2008. Radiation and divergence in the Rhagoletis pomonella species complex: Inferences from DNA sequence data. Journal Evol. Biol. 21: 900-913.